Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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tRNA_selection.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: f993cad |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 1.1.3 |
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main.cwl
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https://github.com/smc-rna-challenge/Ginny-9609499.git
Path: main.cwl Branch/Commit ID: master |
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bams2gvcf.woBQSR_male_chrXY_wXTR.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_male_chrXY_wXTR.cwl Branch/Commit ID: master |
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bird_workflow.cwl
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https://github.com/ReddyLab/bird-workflow.git
Path: bird_workflow.cwl Branch/Commit ID: main |
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kfdrc_alignment_pipeline.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: dev/pilot-run/worklflows/kfdrc_alignment_pipeline.cwl Branch/Commit ID: master |
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TOPMed Alignment
A CWL wrapper of the TopMed alignment workflow described here: https://github.com/statgen/docker-alignment Tool Author: Hyun Min Kang (hmkang@umich.edu) and Adrian Tan (atks@umich.edu) Wrapper Author: Marko Zecevic (marko.zecevic@sbgenomics.com) |
https://github.com/stain/topmed-workflows.git
Path: aligner/sbg-alignment-cwl/topmed-alignment.cwl Branch/Commit ID: no-id |
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lobSTR-workflow.cwl
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https://github.com/common-workflow-language/workflows.git
Path: workflows/lobSTR/lobSTR-workflow.cwl Branch/Commit ID: 17b65ea19d81527090fded62ffa0e1ba3b25d56 |
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rnaseq-alignment-quantification
This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/RNA-Seq/rnaseq-alignment-quantification.cwl Branch/Commit ID: master |
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count-lines9-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines9-wf-noET.cwl Branch/Commit ID: main |
