Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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RSeQC workflow or single-end samples
This workflow runs the RSeQC quality control workflow |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/RSeQC/rseqc-bam-qc-SE.cwl Branch/Commit ID: master |
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gene_extractor.cwl
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https://github.com/ngs-mstb/micgent.git
Path: python/lib/MICGENT/data/cwl/gene_extractor.cwl Branch/Commit ID: master |
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bacterial_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 4ee5718856e3e890949ac48b9a30b68e11ccdd11 |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: low-vaf |
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cmsearch-multimodel.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: d4e5e53 |
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run_total.cwl
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https://github.com/rosafilgueira/DARE_SEISMO.git
Path: processing_elements/CWL_total_staged/run_total.cwl Branch/Commit ID: master |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: preprocess_vcf.cwl Branch/Commit ID: develop |
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bwameth_mulitlib_start_with_trimmed.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/bwameth/bwameth_mulitlib_start_with_trimmed.cwl Branch/Commit ID: main |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: master |
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sum-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/sum-wf-noET.cwl Branch/Commit ID: master |
