Explore Workflows

https://github.com/DataBiosphere/topmed-workflows.git

Path: CRAM-no-header-md5sum/md5sum/CRAM_md5sum.cwl

Branch/Commit ID: b140a0bec7d0f875d83cca82744afcbd285eeeda

https://github.com/lukasheinrich/cwltests.git

Path: cwl/databkgmc.cwl

Branch/Commit ID: ef8ad956cb030de00c949afce02e19c02d6d414c

This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/DataBiosphere/topmed-workflows.git

Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl

Branch/Commit ID: b140a0bec7d0f875d83cca82744afcbd285eeeda

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7

https://github.com/genome/arvados_trial.git

Path: qc/workflow_exome.cwl

Branch/Commit ID: 4cded2c595b2ff83046729cd230f5ad34be3137d

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/demultiplexed-fasta2taxa-summary-plot.cwl

Branch/Commit ID: 4304c60b6e2e7980ad1d659f4b904730ce9c0706

https://github.com/EBI-Metagenomics/CWL-assembly.git

Path: tools/stats/coverage.cwl

Branch/Commit ID: 6d5695af158f4513ce383bb2b15319449f7ddb07

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroup_fastq_se.cwl

Branch/Commit ID: cf2e9d7c3cc87ce97a1fbf73fad574b170fedcfb

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/exec_paleocar/wf_exec_paleocar.cwl

Branch/Commit ID: cd1454539fc62c7a9a66de56459610728dec8baa