Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	umi duplex alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5
	1st-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/examples/1st-workflow.cwl Branch/Commit ID: 8010fd2bf1e7090ba6df6ca8c84bbb96e2272d32
	conditional_markduplicates.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/conditional_markduplicates.cwl Branch/Commit ID: 8edf6a5e4e7790434ad0742e50d0c97a5d0bb846
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5
	extract_capture_kit.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_capture_kit.cwl Branch/Commit ID: 17823fcd036d134df803fbf76e23b0bc5eabedfd
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 4ea5956bb97ea2eb6de124bc9b6a6a81a14fd2e7
	conditional_bamindex.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/conditional_bamindex.cwl Branch/Commit ID: 8edf6a5e4e7790434ad0742e50d0c97a5d0bb846
	wgs alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: 5cb188131f786ed33156e2f0e3dd63ab9c04245d
	integrity.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/integrity.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52