Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
bam to trimmed fastqs and HISAT alignments
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9 |
|
|
|
cluster_blastp_wnode and gpx_qdump combined
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 7edbf07405191db65a913e311a7f2260b076d36c |
|
|
|
extract_readgroup_fastq_se.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroup_fastq_se.cwl Branch/Commit ID: 17823fcd036d134df803fbf76e23b0bc5eabedfd |
|
|
|
count-lines10-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: f207d168f4e7eb4dd2279840d4062ba75d9c79c3 |
|
|
|
Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: 66b5bc323dcd23e1b2c14bf4783babf0f15ca43b |
|
|
|
04-quantification-se-unstranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd |
|
|
|
genomel_individual_workflow.cwl
|
https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/genomel_individual_workflow.cwl Branch/Commit ID: 7504ead048c3acd64b9b92e44d044d558cb696f2 |
|
|
|
process VCF workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014 |
|
|
|
scatter-valuefrom-wf2.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/scatter-valuefrom-wf2.cwl Branch/Commit ID: 26c8b9ca0ffd37c5f76a46a36315f6fd944833fe |
|
|
|
04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685 |
