Explore Workflows

Workflow for handling reads containing two barcodes. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs

https://github.com/yeolab/eclip.git

Path: cwl/wf_clipseqcore_pe_2barcodes.cwl

Branch/Commit ID: master

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: 0.3.0

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 5f120e5bc3c0f75bfbc636ea2c6f4393f5d45ca1

ChIP-seq 02 trimming - reads: SE

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl

Branch/Commit ID: master

Final filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/final_filtering.cwl

Branch/Commit ID: 1.0.6

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/811.cwl

Branch/Commit ID: 9cda157cb4380e9d30dec29f0452c56d0c10d064

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 0cd2d70

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines11-extra-step-wf-noET.cwl

Branch/Commit ID: 31bda22357987171f02ae6513fcc26e011e6afed

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/intersect_intervals.cwl

Branch/Commit ID: master

https://github.com/cwl-for-eo/cwl-how-to.git

Path: 07-scatter-workflows/scatter-input-parameters.cwl

Branch/Commit ID: master

Packed ID: main