Explore Workflows

Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome

https://github.com/datirium/workflows.git

Path: workflows/bowtie-index.cwl

Branch/Commit ID: 799575ce58746813f066a665adeacdda252d8cab

https://github.com/ncbi/pgap.git

Path: spurious_annot/wf_spurious_annot_pass1.cwl

Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/tnhc-distr.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_kmer_build_tree.cwl

Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_wgs.cwl

Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf4.cwl

Branch/Commit ID: a70a83fe14a100cd16e2402ec17b2904f5eeb17d

Packed ID: main

Some workflow engines won't stage files in our nested structure, so parse it out here

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/ug-distr.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086