Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Conversion and compression of RDF files
Workflow to convert a RDF file to the HDT format and GZIP compress it for long term storage |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_toHDT_compression.cwl Branch/Commit ID: master |
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pileups_workflow.cwl
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https://github.com/ReddyLab/bird-workflow.git
Path: 01_mpileups/pileups_workflow.cwl Branch/Commit ID: main |
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exomeseq-gatk4-03-organizedirectories.cwl
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https://github.com/bespin-workflows/exomeseq-gatk4.git
Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl Branch/Commit ID: v2.0.3 |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-08-taxonomic-analysis.cwl |
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joint genotyping for trios or small cohorts
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/joint_genotype.cwl Branch/Commit ID: low-vaf |
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transcriptome_assemble.cwl
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https://github.com/yyoshiaki/DAT2-cwl.git
Path: workflow/transcriptome_assemble/transcriptome_assemble.cwl Branch/Commit ID: develop |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 14985c9 |
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md5sum-workflow.cwl
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https://github.com/dockstore-testing/md5sum-checker.git
Path: md5sum/md5sum-workflow.cwl Branch/Commit ID: develop |
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preference-workflow.cwl
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https://github.com/Duke-GCB/iMADS-worker.git
Path: predict_service/preference-workflow.cwl Branch/Commit ID: master |
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workflow.cwl
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https://github.com/Marco-Salvi/cwl-test.git
Path: wf5401/workflow.cwl Branch/Commit ID: main |
