Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Preprocess fastq
Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: d9cf22cd615542c94f7974e8bce4cf29b24d985f |
|
|
|
integrity.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2 |
|
|
|
abundance
abundace profiles from annotated files, for protein and/or rna |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/abundance.workflow.cwl Branch/Commit ID: d9cf22cd615542c94f7974e8bce4cf29b24d985f |
|
|
|
Unaligned to aligned BAM
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014 |
|
|
|
integrity.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/integrity.cwl Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a |
|
|
|
integrity.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/integrity.cwl Branch/Commit ID: 0d3fdddeae5a398e476d91aa98766965866d8eae |
|
|
|
fastq_clean_se.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/fastq_clean_se.cwl Branch/Commit ID: 10c05314890db2b5bd85c3d338d7f5657fe0c646 |
|
|
|
cram_to_bam workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 8cee1920920ed73384fb3ab74272da9c92a20cf2 |
|
|
|
integrity.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/integrity.cwl Branch/Commit ID: 10c05314890db2b5bd85c3d338d7f5657fe0c646 |
|
|
|
conditional_markduplicates.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/conditional_markduplicates.cwl Branch/Commit ID: 10c05314890db2b5bd85c3d338d7f5657fe0c646 |
