Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/pvacseq.cwl

Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529
workflow graph kmer_top_n_extract

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_top_n_extract.cwl

Branch/Commit ID: ce6b6948f82a7d521b9f11c2d9dc73e3b009ebbe
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl

Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c
workflow graph assemble_and_annotation_dev.cwl

https://github.com/nigyta/bact_genome.git

Path: cwl/workflow/assemble_and_annotation_dev.cwl

Branch/Commit ID: 6472a8e0e9b13eaf21177cc2c2886f0c303e0e16
workflow graph hi-c-processing-pairs-nonorm.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl

Branch/Commit ID: 895a101d06c26f8c7f8a63545b2b74921b5f7526
workflow graph Bisulfite alignment and QC

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a
workflow graph Bisulfite alignment and QC

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529
workflow graph Nested workflow example

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/nested.cwl

Branch/Commit ID: 4700fbee9a5a3271eef8bc9ee595619d0720431b
workflow graph alignment_workflow.cwl

https://github.com/uc-cdis/topmed-cwl.git

Path: aligner/functional-equivalence/workflow/alignment_workflow.cwl

Branch/Commit ID: 4cc5032655bc5041d5be13541c55e30dccc63499