Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph alignment_workflow.cwl

https://github.com/DataBiosphere/topmed-workflows.git

Path: aligner/topmed-cwl/workflow/alignment_workflow.cwl

Branch/Commit ID: 1.32.0
workflow graph STAR-RNA-Seq alignment and transcript/gene abundance workflow with Xenosplit

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq_star_fusion_with_xenosplit.cwl

Branch/Commit ID: master
workflow graph count-lines10-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines10-wf.cwl

Branch/Commit ID: master
workflow graph cram_to_bam workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_bam_and_index.cwl

Branch/Commit ID: a9133c999502acf94b433af8d39897e6c2cdf65f
workflow graph trim_and_map.cwl

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflow_modules/trim_and_map.cwl

Branch/Commit ID: master
workflow graph metaphlan_wfl.cwl

https://github.com/stevetsa/Metaphlan-ISBCGC-Dockstore.git

Path: metaphlan_wfl.cwl

Branch/Commit ID: master
workflow graph inp_update_wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/inp_update_wf.cwl

Branch/Commit ID: main
workflow graph rsem_from_sra_wf.cwl

https://github.com/inutano/sra-star-rsem.git

Path: analysis/processing/readcount/cwl/rsem_from_sra_wf.cwl

Branch/Commit ID: master
workflow graph checker_workflow_wrapping_tool.cwl

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git

Path: checker_workflow_wrapping_tool.cwl

Branch/Commit ID: develop
workflow graph module-2

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-2.cwl

Branch/Commit ID: 2.4.x