Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph snpeff-workflow.cwl

Annotate variants provided in a gziped VCF using SnpEff

https://github.com/andrewjesaitis/cwl-tutorial.git

Path: snpeff-workflow.cwl

Branch/Commit ID: 9c8de191477ca98f6b4088cf010e973a3c3811b9
workflow graph metrics.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/metrics.cwl

Branch/Commit ID: 14558b578bad217685ae3c4807ead2a4392d0319
workflow graph count-lines3-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines3-wf.cwl

Branch/Commit ID: 8dbb46740ea700469b609ae9a05f13e95cb5af6a
workflow graph hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl

Branch/Commit ID: 13b411d94a568e52797ba936732dc65f1a91bd41
workflow graph extract_readgroup_fastq_se.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_readgroup_fastq_se.cwl

Branch/Commit ID: cf2e9d7c3cc87ce97a1fbf73fad574b170fedcfb
workflow graph extract_gencoll_ids

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: 41dfc42a730087189122a2f74b2f547a4665a225
workflow graph exome alignment and germline variant detection

https://github.com/genome/cancer-genomics-workflow.git

Path: germline_exome_workflow.cwl

Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
workflow graph chipseq-pe.cwl

Runs ChIP-Seq BioWardrobe basic analysis with paired-end input data files.

https://github.com/Barski-lab/workflows.git

Path: workflows/chipseq-pe.cwl

Branch/Commit ID: ca2dbb71d0537b1d93a8bd44719250cf8949b157
workflow graph move_and_validate_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/move_and_validate_interleaved_fq.cwl

Branch/Commit ID: a20c4cf8691111b1c526b216b5bf489bf5e4882c
workflow graph chksum_seqval_wf_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: a20c4cf8691111b1c526b216b5bf489bf5e4882c