Explore Workflows
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/Barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: 24c7e3ca12f85415c41cec56595954043dd69c44 |
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integrity.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd |
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module-5
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-5.cwl Branch/Commit ID: 5b6fb984f3cf8e971d677c92a096cd437f34b787 |
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module-6
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-6.cwl Branch/Commit ID: 5b6fb984f3cf8e971d677c92a096cd437f34b787 |
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module-1-2-chunk
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-1-2.chunk.cwl Branch/Commit ID: 5b6fb984f3cf8e971d677c92a096cd437f34b787 |
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module-6
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-6.cwl Branch/Commit ID: 4e0f50f76ff0dfc9c5d9b4a92e4f4ba0fdc9f402 |
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module-4
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-4.cwl Branch/Commit ID: 4e0f50f76ff0dfc9c5d9b4a92e4f4ba0fdc9f402 |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: b4a6e46405c08e0b14ad92f0ab38bcc4a69caa5c |
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count-lines7-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines7-wf.cwl Branch/Commit ID: aaaece1c097c3f06afa21f7ecddcc85519e2bb2b |
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chksum_seqval_wf_paired_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: eed00bbabeae73ef7f00712da17861eade3b9057 |
