Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Filter Protein Seeds I; Find ProSplign Alignments I

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_compart_filter_prosplign.cwl

Branch/Commit ID: 8e00678051e8e11fe2798175401bce04c7eeef19
workflow graph Generate genome index bowtie

Workflow makes indices for [bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016). Executes `bowtie-index` to generate indices requires genome [FASTA](http://zhanglab.ccmb.med.umich.edu/FASTA/) file as input, returns results as a directory

https://github.com/datirium/workflows.git

Path: workflows/bowtie-index.cwl

Branch/Commit ID: d6f58c383d0676269afb519399061191a1144a6a
workflow graph 02-trim-pe.cwl

ChIP-seq 02 trimming - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: f053d1a92762b38b950c4982e3b344cec26f4f36
workflow graph index sim seq

create sorted / filtered similarity file with feature sequences, and index by md5

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/index_sim_seq.workflow.cwl

Branch/Commit ID: 7797879b801042984b5ae651754815fc3f77ea41
workflow graph predict-workflow.cwl

https://github.com/Duke-GCB/iMADS-worker.git

Path: predict_service/predict-workflow.cwl

Branch/Commit ID: a5586cb887e79320b1a3f247591f05102669d0b4
workflow graph Tumor-Only Detect Variants workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_detect_variants.cwl

Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095
workflow graph metrics.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/mirnaseq/metrics.cwl

Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52
workflow graph count-lines3-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines3-wf.cwl

Branch/Commit ID: e59538cd9899a88d7e31e0f259bc56734f604383
workflow graph count-lines11-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl

Branch/Commit ID: ecdfe1ee769d05790f70ac87a711131f441f3753
workflow graph scatter-wf1.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl

Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9