Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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directory.cwl
Inspect provided directory and return filenames. Generate a new directory and return it (including content). |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/directory.cwl Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9 |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 32a040f94e9798bf91858da51598f0d68c35797d |
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epigenome-chip-seq.packed.cwl#main
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https://github.com/pitagora-network/DAT2-cwl.git
Path: workflow/epigenome-chip-seq/epigenome-chip-seq.packed.cwl Branch/Commit ID: 69e7c0479af00695127e402962e1d81b6b8142df Packed ID: main |
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bwa-alignment.cwl
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https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/bwa-alignment.cwl Branch/Commit ID: 793e327acc1d159ff601043ee88651fca62350dd |
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scatter-valuefrom-wf2.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-valuefrom-wf2.cwl Branch/Commit ID: 0e37d46e793e72b7c16b5ec03e22cb3ce1f55ba3 |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 7bb76f33bf40b5cd2604001cac46f967a209c47f |
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Genomic regions intersection and visualization
Genomic regions intersection and visualization ============================================== 1. Merges intervals within each of the filtered peaks files from ChIP/ATAC experiments 2. Overlaps merged intervals and assigns the nearest genes to them |
https://github.com/datirium/workflows.git
Path: workflows/intervene.cwl Branch/Commit ID: 60854b5d299df91e135e05d02f4be61f6a310fbc |
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Bisulfite alignment and QC
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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Raw sequence data to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 92118627c800e4addb7e29b9dabcca073a5bae71 |