Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 2104dc3 |
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bulk_analysis.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/bulk_analysis.cwl Branch/Commit ID: 102d8cb |
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realign-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/realign-distr.cwl Branch/Commit ID: master |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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realignment.cwl
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https://github.com/mskcc/argos-cwl.git
Path: modules/pair/realignment.cwl Branch/Commit ID: 9afe0b169cff4df57d5a5cbf18c6e34d5cdc6998 |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 1.0.7 |
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wf-loadContents.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/wf-loadContents.cwl Branch/Commit ID: main |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl Branch/Commit ID: 1.0.9 |
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workflow.cwl
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https://github.com/vavien/bi-cwl.git
Path: workflow.cwl Branch/Commit ID: main |
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count-lines13-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines13-wf.cwl Branch/Commit ID: master |
