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Showing results for "rnaseq" (Show all)
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rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-pe-dutp.cwl Branch/Commit ID: dcf683418d101917852b1711a91af817d4ea5d03 |
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trim-rnaseq-se-dutp.cwl
Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-se-dutp.cwl Branch/Commit ID: dcf683418d101917852b1711a91af817d4ea5d03 |
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gdc_rnaseq_main_workflow.cwl
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https://github.com/NCI-GDC/gdc-rnaseq-cwl.git
Path: rnaseq-star-align/subworkflows/gdc_rnaseq_main_workflow.cwl Branch/Commit ID: 1da226915d882b79996bae7ca05eae0b3dcbf272 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: e59c77629936fad069007ba642cad49fef7ad29f |
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trim-rnaseq-se.cwl
Runs RNA-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: 812b0ff40dda18ab7a9a872ff13a577be8531ba6 |
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rnaseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/rnaseq-header.cwl Branch/Commit ID: 00ea05e22788029370898fd4c17798b11edf0e57 |
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trim-rnaseq-se-dutp.cwl
Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-se-dutp.cwl Branch/Commit ID: cf84038de256c7ca98657ad81734d1aca1dad8c1 |
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trim-rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-pe-dutp.cwl Branch/Commit ID: 687116aeadebda243e8616e0eda2df4c9466c0bf |
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Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/leipzig/2020-covid-19-bh.git
Path: Ambarish_Kumar_SOP/CWL/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Branch/Commit ID: 63315ece5c005f6dc8bd8b0401aaf7ae8d35e91a |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 5be54bf09092c53e6c7797a875f64a360d511d7f |
