Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
align_sort_sa
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 77a9fa25b89ce73582a1ce6ba75fa6d2537fb8e8 |
|
|
|
Unaligned BAM to BQSR and VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
|
|
|
hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 953d7866bc70e14c02a6bb8c5a72305caa823bfc |
|
|
|
Run pindel on provided region
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
|
|
|
align_sort_sa
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 953d7866bc70e14c02a6bb8c5a72305caa823bfc |
|
|
|
pipeline.cwl
|
https://github.com/hubmapconsortium/ims-mxif-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 03b64703561d12e780d3608079f803dac0d7b5c8 |
|
|
|
Subworkflow to allow calling cnvkit with cram instead of bam files
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
|
|
|
bam to trimmed fastqs and HISAT alignments
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb |
|
|
|
annotation.cwl
|
https://github.com/nigyta/bact_genome.git
Path: cwl/workflow/annotation.cwl Branch/Commit ID: 6472a8e0e9b13eaf21177cc2c2886f0c303e0e16 |
|
|
|
bam2fasta.cwl
|
https://github.com/arvados/bh20-seq-resource.git
Path: workflows/fastq2fasta/bam2fasta.cwl Branch/Commit ID: 4f30e506055acb788a1ff1bbcb6359c4413a4eab |
