Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: master
workflow graph wf_demultiplex_se.cwl

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/YeoLab/eclip.git

Path: cwl/wf_demultiplex_se.cwl

Branch/Commit ID: master
workflow graph count-lines5-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines5-wf.cwl

Branch/Commit ID: master
workflow graph HLA_LA_workflow_full.cwl

https://github.com/mdaya/hla_la_typing.git

Path: HLA_LA_workflow_full.cwl

Branch/Commit ID: master
workflow graph salmon_DESeq2.cwl

https://github.com/rawgene/cwl.git

Path: workflows/salmon_DESeq2.cwl

Branch/Commit ID: master
workflow graph clean_reads_qc.cwl

https://github.com/ngs-mstb/micgent.git

Path: python/lib/MICGENT/data/cwl/clean_reads_qc.cwl

Branch/Commit ID: master
workflow graph alignment_bwa_mem.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem.cwl

Branch/Commit ID: master
workflow graph EMG assembly for paired end Illumina

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: master
workflow graph workflow-phmmer-blast.cwl

https://github.com/ebi-jdispatcher/webservice-cwl.git

Path: workflows/workflow-phmmer-blast.cwl

Branch/Commit ID: master
workflow graph samples_fillout_workflow.cwl

https://github.com/mskcc/pluto-cwl.git

Path: cwl/samples_fillout_workflow.cwl

Branch/Commit ID: master