Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bam to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 3a822294da63b4e19446a285e2fef075e23cf3d0
	schemadef-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/schemadef-wf.cwl Branch/Commit ID: e8b3565a008d95859fc44227987a54e6a53a8c29
	VIRTUS.SE.cwl	https://github.com/yyoshiaki/VIRTUS.git Path: workflow/VIRTUS.SE.cwl Branch/Commit ID: 49687daefb8ae715386f722702755ffaa49283e6
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	count-lines2-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: 9f3b9e7b74d5a904b12674dfd1300b56a48c3d33
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 3a822294da63b4e19446a285e2fef075e23cf3d0
	Immunotherapy Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/immuno.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a