Explore Workflows

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: final-workflow.cwl

Branch/Commit ID: 2a5f8934075f2a838a74822bcdfa05cf711226d2

Workflow converts input BAM file into bigWig and bedGraph files

https://github.com/datirium/workflows.git

Path: subworkflows/bam-bedgraph-bigwig.cwl

Branch/Commit ID: b141f7e73005227d6d02fa03a47151836dd4109b

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_se.cwl

Branch/Commit ID: 0d3fdddeae5a398e476d91aa98766965866d8eae

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroup_fastq_se.cwl

Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl

Branch/Commit ID: 478c2ffc09fb189c4f36ccb82aad945b3db5f9b3

ChIP-seq - Quantification - samples: treatment and control

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/05-quantification-with-control.cwl

Branch/Commit ID: ffdc6d7b155fe301cd49b6e499097cce966159ef

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl

Branch/Commit ID: 4a5fe26e32d244d95f9483c3edfc3df04f3e5f7b

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/tophat2-cufflinks/paired_end/tophat2-cufflinks_wf_pe.cwl

Branch/Commit ID: 3affcd5588e273779b8b4084839ed0582ba2ea18

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_wgs.cwl

Branch/Commit ID: 5cb188131f786ed33156e2f0e3dd63ab9c04245d

PGAP pipeline for external usage, powered via containers

https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982