Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	ani_top_n	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: a539d600357a48a558daf43fc41a89aae79f9e86
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
	cache_asnb_entries	https://github.com/ncbi/pgap.git Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 2d54b11cc9891c9aa52515fe4f8cd9cba12c6629
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	Nested workflow example	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/nested.cwl Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0