Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	process VCF workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	fp_filter workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	HS Metrics workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	infuse_pipeline.cwl	https://github.com/cancerit/cgpRna.git Path: cwls/infuse_pipeline.cwl Branch/Commit ID: 5dce0b09e5a8845458ae2bef08c1cfbff0c01d63
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00
	infuse_pipeline.cwl	https://github.com/cancerit/cgpRna.git Path: cwls/infuse_pipeline.cwl Branch/Commit ID: 60240d4525f74744694af5a2596d7f1ae5cffb54