Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Preprocess fastq Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 963ca6a73a9f8879d57c08fa59548f98f28e755a
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: bcc6adaf15035f5ce6fc851e27b1173b0fd20c1c
	conditional_markduplicates.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/conditional_markduplicates.cwl Branch/Commit ID: 0d3fdddeae5a398e476d91aa98766965866d8eae
	dynresreq-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: ec2cf2da6c31ffedf827a0fb213b5204e172f510
	blastp_wnode_naming	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc
	HS Metrics workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: ffab5424bb8b5905aecf6f8e2e6387da7f3df562
	fastqtosam_pe.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/fastqtosam/fastqtosam_pe.cwl Branch/Commit ID: 17823fcd036d134df803fbf76e23b0bc5eabedfd
	cache_test_workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/cache_test_workflow.cwl Branch/Commit ID: f207d168f4e7eb4dd2279840d4062ba75d9c79c3