Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: gatk4-mutect2-tumor-only-cwl/gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl

Branch/Commit ID: master
workflow graph exome alignment and variant detection

https://github.com/genome/cancer-genomics-workflow.git

Path: exome_workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 3168316
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master
workflow graph functional analysis prediction with InterProScan

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 2104dc3
workflow graph pymethylprocess.cwl

https://github.com/Christensen-Lab-Dartmouth/PyMethylProcess.git

Path: cwl/workflows/pymethylprocess.cwl

Branch/Commit ID: master
workflow graph env-wf1.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/env-wf1.cwl

Branch/Commit ID: 45d6236961118f409c45c1967e1f44b167b737a0
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: 71d9c83
workflow graph dna.cwl#main

https://github.com/YangYang-Lcos/legacy.git

Path: workflows/make-to-cwl/dna.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph copy_outputs.cwl

https://github.com/mskcc/argos-cwl.git

Path: workflows/copy_outputs.cwl

Branch/Commit ID: master