Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad
	count-lines8-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines8-wf.cwl Branch/Commit ID: 9f3b9e7b74d5a904b12674dfd1300b56a48c3d33
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	kmer_cache_retrieve	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: bf7e02ee89d1bb18462cefdbe0db41b09fe75236
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: b12ec8c8e832151033b9e6c0a76a3c3df18d45da
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595