Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Chipseq alignment for nonhuman with qc and creating homer tag directory
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl Branch/Commit ID: low-vaf |
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waltz_workflow_all_bams.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: 0.0.33_dmp |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3168316 |
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Long-covid.cwl
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https://github.com/cwlviewer-test/Long-covid---aedea650-7a21-11ed-b9d2-e51f21933d80.git
Path: Long-covid---aede7f40-7a21-11ed-b9d2-e51f21933d80/Long-covid.cwl Branch/Commit ID: read-potential-cases-disc |
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sequence (bam or fastqs) to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 3b602cb |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: minibam_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 0fed1c9 |
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SPRM pipeline
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https://github.com/hubmapconsortium/sprm.git
Path: pipeline.cwl Branch/Commit ID: d2d5127 |
