Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Creates a FASTJ file per path for each named GVCF

https://github.com/curoverse/l7g.git

Path: cwl-version/convert2fastj/gvcf_version/cwl/tiling_convert2fastj_gvcf_named.cwl

Branch/Commit ID: 7e3bca17f8c4349357c6d01cae54e27047ff9e7d
workflow graph cwlsite.cwl

https://github.com/common-workflow-language/cwl-website.git

Path: site/cwlsite.cwl

Branch/Commit ID: 07ae1b6156f8580bb00ee4bd235578f5a43f6815
workflow graph count-lines9-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl

Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f
workflow graph 03-map-se-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: SE - blacklist removal

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl

Branch/Commit ID: e019c548a0bc2f17b13365abd213259887069978
workflow graph count-lines9-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl

Branch/Commit ID: fec7a10466a26e376b14181a88734983cfb1b8cb
workflow graph Create a tile library (SGLF) for a given set of FastJ files

https://github.com/curoverse/l7g.git

Path: cwl-version/tilelib/cwl/tiling_createsglf_chunk-scatter_v2.cwl

Branch/Commit ID: e4076d3ef7deda1bcc57bfe5e3d1dc7bf58238ff
workflow graph HS Metrics workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: e0b3c76e38630fb6234414b5adebfb6a4fb23117
workflow graph split-bams-by-strand-and-index.cwl

Split reads in a BAM file by strands and index forward and reverse output BAM files

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/quant/split-bams-by-strand-and-index.cwl

Branch/Commit ID: e019c548a0bc2f17b13365abd213259887069978
workflow graph star_samtools_featurecounts_edger.cwl

https://github.com/rawgene/cwl.git

Path: workflows/star_samtools_featurecounts_edger.cwl

Branch/Commit ID: ff0e5dfe44fb85900b5563ab340de8ad3d952eb5