Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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exome_metrics.cwl
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![]() Path: workflows/bamfastq_align/exome_metrics.cwl Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a |
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count-lines2-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: 5c7799a145595323d0a8628be1fe0e24985e793a |
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default-wf5.cwl
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![]() Path: tests/wf/default-wf5.cwl Branch/Commit ID: 5c7799a145595323d0a8628be1fe0e24985e793a |
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03-map-se-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: SE - blacklist removal |
![]() Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd |
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Super-enhancer post ChIP-Seq analysis
Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff) |
![]() Path: workflows/super-enhancer.cwl Branch/Commit ID: 9bf0aa495735f8081bb5870cb32fc898b9e6eb22 |
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pipeline-pe.cwl
ATAC-seq pipeline - reads: PE |
![]() Path: v1.0/ATAC-seq_pipeline/pipeline-pe.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd |
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any-type-compat.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/any-type-compat.cwl Branch/Commit ID: fd6e054510e2bb65eed4069a3a88013d7ecbb99c |
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pipeline-se.cwl
ATAC-seq pipeline - reads: SE |
![]() Path: v1.0/ATAC-seq_pipeline/pipeline-se.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd |
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any-type-compat.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/any-type-compat.cwl Branch/Commit ID: 5c7799a145595323d0a8628be1fe0e24985e793a |
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04-quantification-pe-revstranded.cwl
RNA-seq 04 quantification |
![]() Path: v1.0/RNA-seq_pipeline/04-quantification-pe-revstranded.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd |