Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Add snv and indel bam-readcount files to a vcf
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
|
|
|
sam_to_fastq_workflow.cwl
sam to fastq workflow |
https://github.com/CRI-iAtlas/iatlas-workflows.git
Path: Sam_to_Fastq/workflow/sam_to_fastq_workflow.cwl Branch/Commit ID: c1e75f9217b3488851af1c386b807e82d3c9c50b |
|
|
|
kmer_seq_entry_extract_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: be465ad19b07378f3f863f2c4e0019b420c859f2 |
|
|
|
Run genomic CMsearch (Rfam rRNA)
|
https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100 |
|
|
|
Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100 |
|
|
|
umi per-lane alignment subworkflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97 |
|
|
|
exomeseq-gatk4-03-organizedirectories.cwl
|
https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl Branch/Commit ID: bbe24d8d7fde2e918583b96805909a2867b749d6 |
|
|
|
tt_hmmsearch_wnode.cwl
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: f2bd4687f06f85ea848b6f1ce04ec97f48525334 |
|
|
|
exome alignment with qc
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
|
|
|
Unaligned to aligned BAM
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 9143dc4ebacb9e1df36a712b0be6fa5d982b0c4f |
