Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 485f0be56cea77bff62b797ae7eff422a990a92c |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5 |
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umi per-lane alignment subworkflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d |
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BLAST against rRNA db
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 3e7a3c1cc1ed5164ae0a51a96f20d7c480d1d70b |
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cluster_blastp_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 485f0be56cea77bff62b797ae7eff422a990a92c |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
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Seed Protein Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 485f0be56cea77bff62b797ae7eff422a990a92c |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: 78955730b492047429e00d0a0620d37efb6dbbfe |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5 |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1 |
