Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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count-lines5-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: 1f501e38ff692a408e16b246ac7d64d32f0822c2 |
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rna annotation
RNAs - predict, cluster, identify, annotate |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/rna-annotation.workflow.cwl Branch/Commit ID: f906212e2c9a88280ae36545e5422f25752aa8f4 |
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bam-bedgraph-bigwig.cwl
Workflow converts input BAM file into bigWig and bedGraph files |
https://github.com/Barski-lab/workflows.git
Path: subworkflows/bam-bedgraph-bigwig.cwl Branch/Commit ID: fb355eda4555a7e7182a91ce045212b0a087d73f |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: c711498c04d6b8ddf92ddceb6219f074765f7993 |
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extract_readgroups_bam_http.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroups_bam_http.cwl Branch/Commit ID: 0d3fdddeae5a398e476d91aa98766965866d8eae |
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scatterfail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatterfail.cwl Branch/Commit ID: fec7a10466a26e376b14181a88734983cfb1b8cb |
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Filters gVCFs by a specified quality cutoff
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https://github.com/curoverse/l7g.git
Path: cwl-version/filter/cwl/tiling_filtergvcf.cwl Branch/Commit ID: 2d067e70af7c1a49a2a015ddcd0d859b0b885e98 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 1bf7dc7b03ea3c64e54375cc5c3767849a801000 |
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readgroup_fastq_se.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/readgroup_fastq_se.cwl Branch/Commit ID: 0d3fdddeae5a398e476d91aa98766965866d8eae |
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04-quantification-pe-unstranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-unstranded.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd |
