Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pindel parallel workflow

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: master
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: 8515542
workflow graph WGS QC workflow

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: qc/workflow_wgs.cwl

Branch/Commit ID: master
workflow graph exomeseq-gatk4-03-organizedirectories.cwl

https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl

Branch/Commit ID: develop
workflow graph 5S-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: d4e5e53
workflow graph exome alignment and germline variant detection

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/germline_exome.cwl

Branch/Commit ID: master
workflow graph ribosomal_cleanup

This workflow detect and remove ribosomal from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/ribosomal-cleanup.cwl

Branch/Commit ID: master
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: d4e5e53
workflow graph collate_unique_rRNA_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_rRNA_headers.cwl

Branch/Commit ID: 0fed1c9
workflow graph snpeff-workflow.cwl

Annotate variants provided in a gziped VCF using SnpEff

https://github.com/andrewjesaitis/cwl-tutorial.git

Path: snpeff-workflow.cwl

Branch/Commit ID: master