Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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tRNA_selection.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: ecf044f3a5a7589cb2238487a19f22863c2bcdb1 |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383 |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383 |
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5S-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/5S-from-tablehits.cwl Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383 |
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conditional_markduplicates.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/conditional_markduplicates.cwl Branch/Commit ID: b110a23e2efaaadfd4feca4f9e130946d1c5418d |
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BLAST against rRNA db
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https://github.com/ncbi-gpipe/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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Trim and reformat reads (single and paired end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383 |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383 |
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transform.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/transform.cwl Branch/Commit ID: cf2e9d7c3cc87ce97a1fbf73fad574b170fedcfb |
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Run genomic CMsearch (5S rRNA)
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https://github.com/ncbi-gpipe/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
