Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph etl.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/etl.cwl

Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c
workflow graph extract_readgroups_bam.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_readgroups_bam.cwl

Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c
workflow graph QIIME2 Step 1

QIIME2 Import and Demux Step 1

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step1-import-demux.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: main
workflow graph haplotypecaller.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/haplotypecaller.cwl

Branch/Commit ID: 28bb82ba031041321ff9caa5c299ec1bb15d7471
workflow graph Seed Protein Alignments I

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_seed_1.cwl

Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a
workflow graph Filter single sample sv vcf from paired read callers(Manta/Smoove)

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl

Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: 1a9dfe2c0e6414786222beffe1d0b4cf5310553f
workflow graph iwdr_with_nested_dirs.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/iwdr_with_nested_dirs.cwl

Branch/Commit ID: 84939620c3eec1ab11369849c63237ebfa48da41
workflow graph transcriptome_annotation.cwl

https://github.com/ncbi/cloud-transcriptome-annotation.git

Path: bin/cwl-ngs-workflows-cbb/workflows/Annotation/transcriptome_annotation.cwl

Branch/Commit ID: ae381d0d81c8e8c9a9d5887e23f6606268c8a204
workflow graph checker-synapse-get-anntotations.cwl

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

 https://github.com/Sage-Bionetworks-Workflows/dockstore-tool-synapseclient.git

Path: checkers/checker-synapse-get-anntotations.cwl

Branch/Commit ID: 64620d6b569bb6b145fbfd3c001a8b13951364bb