Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
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cram_to_bam workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
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strelka workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
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pindel parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
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nestedworkflows.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/examples/nestedworkflows.cwl Branch/Commit ID: 691dea280b40ac177b4a38b33375139ca0ce7e81 |
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exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945 |
