Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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count-lines7-single-source-wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/count-lines7-single-source-wf_v1_0.cwl Branch/Commit ID: 0fe3ca65d19ed76b7c5095cf2d915658d26b87fb |
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EMG pipeline v3.0 (single end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5833078 |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: qc/workflow_wgs.cwl Branch/Commit ID: toil_compatibility |
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io-int-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/io-int-wf.cwl Branch/Commit ID: main |
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Hello World
Outputs a message using echo |
https://github.com/YangYang-Lcos/legacy.git
Path: workflows/hello/hello-param.cwl Branch/Commit ID: master |
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env-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/env-wf1.cwl Branch/Commit ID: master |
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gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl
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https://github.com/nci-gdc/gatk4_mutect2_cwl.git
Path: gatk4-mutect2-tumor-only-cwl/gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl Branch/Commit ID: master |
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exome alignment and variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: exome_workflow.cwl Branch/Commit ID: toil_compatibility |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 3168316 |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
