Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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tpp.cwl
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https://github.com/sbg/sbg_dockstore_tools.git
Path: trans_proteomic_pipeline/tpp.cwl Branch/Commit ID: master |
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bwameth_singlelib.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/bwameth/bwameth_singlelib.cwl Branch/Commit ID: main |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: downsample_and_recall |
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pcawg_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: pcawg_annotate_wf.cwl Branch/Commit ID: 1.0.0 |
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wf_wrapper_paleocar.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/wrapper_paleocar/wf_wrapper_paleocar.cwl Branch/Commit ID: master |
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alignment_novoalign.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/alignment_novoalign.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 135976d |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: salmon-rnaseq/steps/salmon-quantification.cwl Branch/Commit ID: 68e0cc1 |
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echo-wc_inline.cwl
Counts words of a message via echo and wc |
https://github.com/NLeSC/scriptcwl.git
Path: tests/data/workflows/echo-wc_inline.cwl Branch/Commit ID: master |
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exome alignment and tumor-only variant detection
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https://github.com/litd/analysis-workflows.git
Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: master |
