Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075
	readgroups_bam_to_readgroups_fastq_lists.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52
	umi molecular alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/umi_molecular_alignment.cwl Branch/Commit ID: 7f9dfad8e45ca096ae738cff646195b2b1ba7d7f
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: ef266744578e2dcbce57c110c6fa3b9eee91e316
	default-wf5.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/default-wf5.cwl Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 0805e8e0d358136468e0a9f49e06005e41965adc
	default-wf5.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/default-wf5.cwl Branch/Commit ID: 9e7c68c0834645ba53a7e2b5f70d53df9d051c92
	list ZIP content by URL curl will download a HTTP/HTTPS resource or file from a given URL, following any redirections.	https://github.com/stain/ro-index-paper.git Path: code/data-gathering/workflows/zip-content-by-url.cwl Branch/Commit ID: aee2790a662cc9f9e3b46860b8242e106a2bea1c
	Seed Search Compartments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_seed.cwl Branch/Commit ID: ef266744578e2dcbce57c110c6fa3b9eee91e316
	02-trim-se.cwl ATAC-seq 02 trimming - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121