Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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umi duplex alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/umi_duplex_alignment.cwl Branch/Commit ID: 1249b5d4e23d57ca5e3b8ad6d8e5f10ddb019f68 |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: 5461e63dc4714bb81e1c9f58e436c8465107a199 |
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pindel parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f |
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count-lines4-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl Branch/Commit ID: cb81b22abc52838823da9945f04d06739ab32fda |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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Resolve duplicate/overlapping calls in the gVCFs in a named list
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https://github.com/curoverse/l7g.git
Path: cwl-version/clean/cwl/tiling_clean_gvcf_named.cwl Branch/Commit ID: 720b557e4a822da8c6139a1143e2c8ceaf2102ff |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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Creates a FASTJ file per path for each named GVCF
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https://github.com/curoverse/l7g.git
Path: cwl-version/convert2fastj/gvcf_version/cwl/tiling_convert2fastj_gvcf_named.cwl Branch/Commit ID: 720b557e4a822da8c6139a1143e2c8ceaf2102ff |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 5461e63dc4714bb81e1c9f58e436c8465107a199 |
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search.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/search.cwl Branch/Commit ID: e2ec740fccc81ff7071dcd607c5c158fbc0dfb90 Packed ID: main |