Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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BLAST against rRNA db
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 16d1198871195e2229fd44dd0ad94a4ed6a87caf |
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genomics-workspace-genome.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-genome.cwl Branch/Commit ID: f6359e34e88cbd8b8a52de86d5377294411ce965 |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff |
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chipseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/chipseq-header.cwl Branch/Commit ID: 4a80f5b8f86c83af39494ecc309b789aeda77964 |
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running cellranger mkfastq and count
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
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chipseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/chipseq-header.cwl Branch/Commit ID: 3ed3e43ac7cec3439101197c488c7859887b1e88 |
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count-lines1-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines1-wf.cwl Branch/Commit ID: cd779a90a4336563dcf13795111f502372c6af83 |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: aa64bf6a90e0780ab564de865dbb027df98c0a01 |
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running cellranger mkfastq and count
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19 |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi/pgap.git
Path: pgap.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7 |
