Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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gathered exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/gathered_somatic_exome.cwl Branch/Commit ID: 24e5290aec441665c6976ee3ee8ae3574c49c6b5 |
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count-lines1-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines1-wf.cwl Branch/Commit ID: f207d168f4e7eb4dd2279840d4062ba75d9c79c3 |
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01-qc-pe.cwl
RNA-seq 01 QC - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: dd2241dbbbc23abd91b5e6a18c139530e7ef8d2b |
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gathered exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/gathered_somatic_exome.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1 |
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metrics.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/metrics.cwl Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a |
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tophat2-cufflinks_wf_se.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/tophat2-cufflinks/single_end/tophat2-cufflinks_wf_se.cwl Branch/Commit ID: 3affcd5588e273779b8b4084839ed0582ba2ea18 |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: bcc6adaf15035f5ce6fc851e27b1173b0fd20c1c |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: bcc6adaf15035f5ce6fc851e27b1173b0fd20c1c |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 92bdcd9fa879161834ecdb1c4c9ac7c46e940206 |
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kallisto_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/kallisto/paired_end/kallisto_wf_pe.cwl Branch/Commit ID: 3affcd5588e273779b8b4084839ed0582ba2ea18 |
