Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Creates a FASTJ file per path for each named GVCF
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https://github.com/curoverse/l7g.git
Path: cwl-version/convert2fastj/gvcf_version/cwl/tiling_convert2fastj_gvcf_named.cwl Branch/Commit ID: e0d513006822c0acdbf014638d11fc9a237c59f1 |
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Super-enhancer post ChIP-Seq analysis
Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff) |
https://github.com/datirium/workflows.git
Path: workflows/super-enhancer.cwl Branch/Commit ID: 9ee330737f4603e4e959ffe786fbb2046db70a00 |
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screen out taxa
Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files) |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/organism-screening.workflow.cwl Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6 |
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scatterfail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatterfail.cwl Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e |
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dynresreq-workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e |
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count-lines6-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines6-wf.cwl Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e |
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bambino_rna_indel.cwl
Somatic indel detector for tumor RNA-Seq data |
https://github.com/stjude/RNAIndel.git
Path: bambino_rna_indel.cwl Branch/Commit ID: 3f42fde37f333c69ad5f95dd4be60672fb4a0842 |
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schemadef-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/schemadef-wf.cwl Branch/Commit ID: 26c8b9ca0ffd37c5f76a46a36315f6fd944833fe |
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sec-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/sec-wf.cwl Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: c711498c04d6b8ddf92ddceb6219f074765f7993 |