Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
gatk-4.0.0.0-library-cram-to-gvcfs.cwl
|
https://github.com/wtsi-hgi/arvados-pipelines.git
Path: cwl/workflows/gatk-4.0.0.0-library-cram-to-gvcfs.cwl Branch/Commit ID: c822e40575ecd7fc65626a73363f3bbc193b9a74 |
||
basename-fields-test.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: 691dea280b40ac177b4a38b33375139ca0ce7e81 |
||
wgs alignment with qc
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: 891c996dbd23d8154ec7609a56da3de841ae124c |
||
schemadef-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/schemadef-wf.cwl Branch/Commit ID: 691dea280b40ac177b4a38b33375139ca0ce7e81 |
||
Align reference proteins plane complete workflow
|
https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023 |
||
Run tRNAScan
|
https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023 |
||
Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023 |
||
Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023 |
||
scatter GATK HaplotypeCaller over intervals
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 27aa22e6f5d2fca75abca42d52867259fd0725b9 |
||
spurious_annot
|
https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023 |