Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph validate_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/validate_interleaved_fq.cwl

Branch/Commit ID: 084ba4ee91af7bc98abbc6e13c3937cb87f932ae
workflow graph phase VCF

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/phase_vcf.cwl

Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529
workflow graph integrity.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/integrity.cwl

Branch/Commit ID: 1326fb7fedca91a274fb7596c9052a4d279eacf9
workflow graph cache_asnb_entries

https://github.com/ncbi/pgap.git

Path: task_types/tt_cache_asnb_entries.cwl

Branch/Commit ID: 1a6b9e5dea09caa0debbaff30ca39005dfa5e4d4
workflow graph trim-chipseq-pe.cwl

ChIP-Seq basic analysis workflow for a paired-end experiment with Trim Galore.

https://github.com/datirium/workflows.git

Path: workflows/trim-chipseq-pe.cwl

Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9
workflow graph DESeq - differential gene expression analysis

Differential gene expression analysis based on the negative binomial distribution

https://github.com/datirium/workflows.git

Path: workflows/deseq.cwl

Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9
workflow graph xenbase-chipseq-se.cwl

XenBase workflow for analysing ChIP-Seq single-end data

https://github.com/datirium/workflows.git

Path: workflows/xenbase-chipseq-se.cwl

Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9
workflow graph heatmap.cwl

Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension

https://github.com/datirium/workflows.git

Path: workflows/heatmap.cwl

Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9
workflow graph xenbase-chipseq-pe.cwl

XenBase workflow for analysing ChIP-Seq paired-end data

https://github.com/datirium/workflows.git

Path: workflows/xenbase-chipseq-pe.cwl

Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9
workflow graph MAnorm - quantitative comparison of ChIP-Seq data

MAnorm is a robust model for quantitative comparison of ChIP-Seq data sets of TFs (transcription factors) or epigenetic modifications.

https://github.com/datirium/workflows.git

Path: workflows/manorm.cwl

Branch/Commit ID: 3ceeb2e90f49579369b2e10485908516348381a9