Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Transcriptome assembly workflow (paired-end version)
|
https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TranscriptomeAssembly-wf.paired-end.cwl Branch/Commit ID: b837972f9d442f9fd1e0cbc8be83754032b2c0fe |
|
|
|
env-wf2.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/env-wf2.cwl Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e |
|
|
|
BLAST against rRNA db
|
https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 8761d0526f932dea879403d51251316ef331f082 |
|
|
|
Preprocess fastq
Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: f906212e2c9a88280ae36545e5422f25752aa8f4 |
|
|
|
nestedworkflows.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/examples/nestedworkflows.cwl Branch/Commit ID: cb81b22abc52838823da9945f04d06739ab32fda |
|
|
|
cluster_blastp_wnode and gpx_qdump combined
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 8761d0526f932dea879403d51251316ef331f082 |
|
|
|
count-lines13-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl Branch/Commit ID: e2ec740fccc81ff7071dcd607c5c158fbc0dfb90 |
|
|
|
step-valuefrom3-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e |
|
|
|
Execute CRISPR
|
https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 8761d0526f932dea879403d51251316ef331f082 |
|
|
|
wgs alignment and germline variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: c711498c04d6b8ddf92ddceb6219f074765f7993 |
