Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 1.1.3 |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (paired end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: ca6ca613 |
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wf_get_peaks_scatter_chimeric_se.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_chimeric_se.cwl Branch/Commit ID: master |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 293dc7b83639d21a56efff2baf9dfe4e97b9b806 |
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star_samtools_stringtie_prepDE_DESeq2.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/star_samtools_stringtie_prepDE_DESeq2.cwl Branch/Commit ID: master |
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star-stringtie_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/star-stringtie/paired_end/star-stringtie_wf_pe.cwl Branch/Commit ID: master |
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hecil.cwl
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https://github.com/Alves-Bruno/hecil-cwl.git
Path: hecil.cwl Branch/Commit ID: master |
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BLASTP, parse, dump FASTA
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https://github.com/NCBI-Hackathons/BLAST-Pipelines-and-FAIR.git
Path: blast-pipelines/simple_three_step.cwl Branch/Commit ID: master |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: develop |
