Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph sc_atac_seq_prep_process_init.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/sc_atac_seq_prep_process_init.cwl

Branch/Commit ID: 06aeffe
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 1.0.0
workflow graph WGS processing workflow for single sample

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl

Branch/Commit ID: main
workflow graph wgsp_alignment_fq_wf.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/wgsp_alignment_fq_wf.cwl

Branch/Commit ID: dev
workflow graph conflict-wf.cwl#collision

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conflict-wf.cwl

Branch/Commit ID: main

Packed ID: collision
workflow graph Bacterial Annotation, ab initio (first pass) searched against AntiFam

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_ab_initio_antifam.cwl

Branch/Commit ID: master
workflow graph cond-wf-003_nojs.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-003_nojs.cwl

Branch/Commit ID: main
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 3168316
workflow graph l1a_workflow.cwl

https://github.com/mliukis/sounder-sips-application.git

Path: cwl/l1a_workflow.cwl

Branch/Commit ID: main
workflow graph RSeQC workflow or single-end samples

This workflow runs the RSeQC quality control workflow

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RSeQC/rseqc-bam-qc-SE.cwl

Branch/Commit ID: master