Explore Workflows
View already parsed workflows here or click here to add your own
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workflow.cwl
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Path: flow_download/workflow.cwl Branch/Commit ID: master |
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wf_trim_and_map_pe.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
Path: cwl/wf_trim_and_map_pe.cwl Branch/Commit ID: master |
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workflow1_11.cwl#VDJ_Assemble_and_Annotate_Contigs_IG.cwl
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Path: workflow1_11.cwl Branch/Commit ID: main Packed ID: VDJ_Assemble_and_Annotate_Contigs_IG.cwl |
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01-qc-pe.cwl
RNA-seq 01 QC - reads: PE |
Path: v1.0/RNA-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: master |
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germline.cwl
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Path: Workflows/germline.cwl Branch/Commit ID: master |
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kfdrc_flagstat_qc.cwl
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Path: workflow/kfdrc_flagstat_qc.cwl Branch/Commit ID: master |
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pipeline.cwl
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Path: pipeline.cwl Branch/Commit ID: master |
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04-quantification-pe-stranded.cwl
RNA-seq 04 quantification |
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl Branch/Commit ID: master |
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process_target_workflow.cwl
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Path: utils/IM/LINC/lincSun/workflow/process_target_workflow.cwl Branch/Commit ID: master |
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metrics-flow.cwl
Run metrics workflow |
Path: stage/metrics-flow.cwl Branch/Commit ID: master |
