Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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transform_mirna.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/transform_mirna.cwl Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3 |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757 |
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Per-chromosome pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 68eda647259849ca81ac0bb07a24bc8a4465a630 |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/cluster2plot.cwl Branch/Commit ID: 700de5444d35b3fff2a0536075a6e1d0f7b1446a |
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ensembl_genomes_to_variation_graph_with_uniprot_annotation_rdf.cwl
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https://github.com/vgteam/Veguns.git
Path: ensemblBacteriaUniProtVgExample/ensembl_genomes_to_variation_graph_with_uniprot_annotation_rdf.cwl Branch/Commit ID: 92937002a9ef66c3900556ccc1abc0998ada433d |
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sac-preprocess.cwl#main
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/sac-preprocess.cwl Branch/Commit ID: d6934f4f866401fcdf7b5884abb63f77b69aab62 Packed ID: main |
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fastq_clean_pe.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/fastq_clean_pe.cwl Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de |
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etl.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/fastq_readgroup_stats/etl.cwl Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de |
