Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	04-quantification-pe-revstranded.cwl RNA-seq 04 quantification	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/RNA-seq_pipeline/04-quantification-pe-revstranded.cwl Branch/Commit ID: 13826f526a99e151e9cf5f22e70bdcf4feea73f4
	02-trim-se.cwl RNA-seq 02 trimming - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl Branch/Commit ID: dd2241dbbbc23abd91b5e6a18c139530e7ef8d2b
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982
	module-2	https://github.com/mskcc/roslin-variant.git Path: setup/cwl/module-2.cwl Branch/Commit ID: 72353a747f45ffe35863c3b6c70b28a676a97643
	xenbase-sra-to-fastq-pe.cwl	https://github.com/datirium/workflows.git Path: subworkflows/xenbase-sra-to-fastq-pe.cwl Branch/Commit ID: b141f7e73005227d6d02fa03a47151836dd4109b
	exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_mouse.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc
	BLAST against rRNA db	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982
	steplevel-resreq.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/steplevel-resreq.cwl Branch/Commit ID: ec2cf2da6c31ffedf827a0fb213b5204e172f510
	module-6	https://github.com/mskcc/roslin-variant.git Path: setup/cwl/module-6.cwl Branch/Commit ID: 08e592a521057cef4982c1d4111d2e3b30ea3f2f
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: e0b3c76e38630fb6234414b5adebfb6a4fb23117