Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b |
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scatter-valuefrom-wf2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf2.cwl Branch/Commit ID: efb40a812cdba2df6699f130ee5aeea9b63045cd |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65 |
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Seed Search Compartments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19 |
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Seed Protein Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b |
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Seed Protein Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65 |
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functional-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/checker_wf/functional-wf.cwl Branch/Commit ID: ead263db0e167db39ddbdc79b04d343943d129b6 |
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Unaligned bam to sorted, markduped bam
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe |
