Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	gathered exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601
	Replace legacy AML Trio Assay	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd
	extract_readgroup_fastq_se.cwl	https://github.com/NCI-GDC/gdc-mirnaseq-cwl.git Path: workflows/mirnaseq_automation/extract_readgroup_fastq_se.cwl Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a
	rapdb-pipeline.cwl	https://github.com/nigyta/rice_reseq.git Path: workflows/rapdb-pipeline.cwl Branch/Commit ID: 356c47bb87dbcd9a9cb565f147b0dad298dea6cb
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd
	transform.cwl	https://github.com/NCI-GDC/gdc-mirnaseq-cwl.git Path: workflows/mirnaseq_automation/transform.cwl Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3