Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Decompress Decompress mate pair fastq files	https://github.com/MG-RAST/amplicon.git Path: CWL/Workflows/decompress_mate_pair.workflow.cwl Branch/Commit ID: 989ccc28212983c2ed00e9461639fdf4df6481d4
	dynresreq-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: 227f35a5ed50c423afba2353871950aa61d58872
	Filter ChIP/ATAC peaks for Tag Density Profile or Motif Enrichment analyses Filters ChIP/ATAC peaks with the neatest genes assigned for Tag Density Profile or Motif Enrichment analyses ============================================================================================================ Tool filters output from any ChIP/ATAC pipeline to create a file with regions of interest for Tag Density Profile or Motif Enrichment analyses. Peaks with duplicated coordinates are discarded.	https://github.com/datirium/workflows.git Path: workflows/filter-peaks-for-heatmap.cwl Branch/Commit ID: 8049a781ac4aae579fbd3036fa0bf654532f15be
	gaps_or_not.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: gaps_or_not.cwl Branch/Commit ID: aa375dcaa5ccfbb4e2aa4433d10948c641b044eb
	abra_workflow.cwl	https://github.com/andurill/ACCESS-Pipeline.git Path: workflows/ABRA/abra_workflow.cwl Branch/Commit ID: e7754fb4d3cd14068eef0c498cc5c6fcf53dc31f
	count-lines8-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines8-wf.cwl Branch/Commit ID: fec7a10466a26e376b14181a88734983cfb1b8cb
	count-lines11-null-step-wf-noET.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/count-lines11-null-step-wf-noET.cwl Branch/Commit ID: a5ae5ad0c9017ed625fb372f65e72dbb069439b0
	Filter differentially expressed genes from DESeq for Tag Density Profile Analyses Filters differentially expressed genes from DESeq for Tag Density Profile Analyses ================================================================================== Tool filters output from DESeq pipeline run for genes to create a file with regions of interest for Tag Density Profile Analyses.	https://github.com/datirium/workflows.git Path: workflows/filter-deseq-for-heatmap.cwl Branch/Commit ID: 1a46cb0e8f973481fe5ae3ae6188a41622c8532e
	qc-assembled.workflow.cwl	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/qc-assembled.workflow.cwl Branch/Commit ID: 662d424d2e433e636f46a79025325d5daaca6271
	protein similarities run diamond on mutlple DBs and merge-sort results	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/protein-diamond.workflow.cwl Branch/Commit ID: 81feefc84ec0faecf1ade718001d5f07610e616e