Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: 48381989cb983567ed936fde632714933df65350
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 48381989cb983567ed936fde632714933df65350
	count-lines12-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines12-wf.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 252e7214ac64cb1128881e76743013e61bc7ec38
	count-lines12-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines12-wf.cwl Branch/Commit ID: cf9d7cdefa6dfb3b678636da02bc55b6108c04ac