Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	01-qc-se.cwl ChIP-seq 01 QC - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/01-qc-se.cwl Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121
	any-type-compat.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/any-type-compat.cwl Branch/Commit ID: e59538cd9899a88d7e31e0f259bc56734f604383
	Super-enhancer post ChIP-Seq analysis Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: b141f7e73005227d6d02fa03a47151836dd4109b
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: ae75b938e6e8ae777a55686bbacad824b3c6788c
	02-trim-pe.cwl ChIP-seq 02 trimming - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: dd2241dbbbc23abd91b5e6a18c139530e7ef8d2b
	blastp_wnode_naming	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: b12ec8c8e832151033b9e6c0a76a3c3df18d45da
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba
	Run genomic CMsearch (5S rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 66b5bc323dcd23e1b2c14bf4783babf0f15ca43b
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b