Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b
	wgs alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc
	trnascan_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: ce433f771ebf5677c9f40858e2ae91b1a7e75d30
	BLAST against rRNA db	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b
	workflow-fetch-phobius.cwl	https://github.com/ebi-wp/webservice-cwl.git Path: workflows/workflow-fetch-phobius.cwl Branch/Commit ID: b191ca3e4273b922bba6af4c1eacdaa86a5b62f4
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b