Explore Workflows

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop

https://github.com/rawgene/cwl.git

Path: workflows/star_samtools_stringtie_prepDE_DESeq2.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 9c57dba

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: downsample_and_recall

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 2104dc3

creates genome coverage bigWig file from .bam file

https://github.com/barski-lab/ga4gh_challenge.git

Path: workflows/bam-genomecov-bigwig.cwl

Branch/Commit ID: v0.0.2

Some workflow engines won't stage files in our nested structure, so parse it out here

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: low-vaf

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_deepvariant_module.cwl

Branch/Commit ID: master

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/kfdrc_flagstat_qc.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/workflows.git

Path: workflows/compile/compile1.cwl

Branch/Commit ID: feature/feature-GATK-Yassine

Packed ID: main